You would only aggregate like transactions; cash-ins are aggregated and cash-outs are aggregated separately. In you example, only the cash-in was over $10,000 so it would be reported. Because the cash-outs were not over $10,000, they would not be reported. The CTR in this case would report a $10,001 cash-in.
_________________________
I hear and I forget. I see and I remember. I do and I understand.--Confucius