If you want to recover the funds, send the customer a letter asking him to confirm his permission to do so by signing and returning a copy. Include a SASE to make it REALLY easy for him to provide you the signature.
Taking those funds with the customer's permission would not violate Regulation E. I'd just be more comfortable if the permission is documented.
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John S. Burnett
BankersOnline.com
Fighting for Compliance since 1976
Bankers' Threads User #8