If they are filing a modification of the deed, I would classify that as a security document, which is required to have the NMLS information listed. I know in our shop, deed modifications are listed in the security agreement on renewal notes along with the original deed filing related to the collateral property address.
Regardless, listing the NMLS information is 1--easy and 2--doesn't hurt you to list even if it's not required.
Personally, the SAFE Act and the Reg Z requirement to list the NMLS number on certain documents are 2 of the dumbest pieces of mortgage reform. Neither add any real value, and really only act as regulatory "gotcha" fodder. If you have to ask, just list the number and move on to something that can really hurt you, like RESPA tolerance violations and ATR/QM violations.
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I can't herd the cats anymore, so I just set up the electric fences and let them fry when they stray out of bounds.