If you aren't making use of the SAR software that FinCEN has on their website, that would be a quick and easy way of doing it. We're a $3Billion bank and that's what we use--along with an excel spredsheet that acts as a log of when things come in, get decisioned, and when they are reported to the Audit Committe of the BOD.
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Everyone has to make a living, mine just happens to involve thumbscrews.