First, if your customer agrees to move those transfers from the MMDA or savings account to the transaction account, and the result is that the customer no longer exceeds the transfer limits, the goal of the rule is reached, with regard to that customer. Examiners are supposed to cite a bank only if customers exceed the limits more than occasionally. There is no regulatory bright line on "occasionally" for your portfolio of savings accounts, but there is one for the individual account -- the so-called "three strike" rule. Even then, regulators encourage a bank to act faster if a customer is blatantly violating the limits.
From what I've heard, examiners generally ease into citing a bank formally. They start with a warning or suggestion that you need to clean things up. If I were an examiner, and saw you work with a customer to get transfers moved over to come from a transaction account, I'd note that as a positive.
And for the record, if you have a recalcitrant customer who won't change direct debits to come out of a transaction account, you can issue and follow through with an ultimatum short of closing the account: "If you don't arrange for your ACH debits to come from your checking account, we will start returning them due to the targeted account not being authorized to accept ACH debits." But by the time you reach that point, I suggest you're probably better off terminating the deposit relationship.
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John S. Burnett
BankersOnline.com
Fighting for Compliance since 1976
Bankers' Threads User #8