Your question is a little confusing as written, at least to me. You say you list your credit report cost under lender credits for the LE, but under Closing Cost Subtotals (Sec. J, Line 1) on the CD and not Lender Credits??
Either way, the lender credits that are reported for HMDA purposes are specifically the amount listed under the "Lender Credits" line on the CD (correlating to Reg. Z Sec. 1026.38(h)(3)).
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My opinion, take it for what its worth. Opinions expressed are my own and not those of my employer and are not legal advice.